Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs10498487 | chr14:59588323 | T/C | 5.08E-10 | 488 | 15.9 | 16.22 | 5.8 | KM Plot |
| THCA | rs10498489 | chr14:59610460 | T/G | 5.31E-10 | 484 | 15.9 | 16.48 | 6.83 | KM Plot |
| THCA | rs10500594 | chr11:4166986 | C/T | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10501063 | chr11:26686565 | A/C | 0.000288 | 490 | 15.87 | 16.23 | 9 | KM Plot |
| THCA | rs10509758 | chr10:104681710 | T/C | 3.32E-8 | 489 | 15.48 | 17.13 | 19.1 | KM Plot |
| THCA | rs10509760 | chr10:104634107 | A/G | 4.8E-9 | 490 | 15.23 | 17.68 | 32.1 | KM Plot |
| THCA | rs10509763 | chr10:104776391 | G/A | 5.04E-9 | 490 | 15.2 | 17.73 | 32.1 | KM Plot |
| THCA | rs10512203 | chr9:93659034 | G/T | 5.14E-9 | 490 | 15.98 | 15.93 | 11.55 | KM Plot |
| THCA | rs10515251 | chr5:96204899 | G/C | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs10515252 | chr5:96205387 | C/G | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs10518262 | chr19:43634170 | A/T | 0.000187 | 490 | 15.75 | 16.2 | 17.77 | KM Plot |
| THCA | rs1054054 | chr10:81682728 | C/T | 2.68E-5 | 486 | 16.08 | 16.07 | 6.03 | KM Plot |
| THCA | rs1054862 | chr6:24423594 | A/G | 5.55E-15 | 488 | 16.37 | 14.85 | 11.07 | KM Plot |
| THCA | rs1054868 | chr6:24423675 | G/A | 7.22E-15 | 486 | 16.3 | 14.85 | 11.07 | KM Plot |
| THCA | rs10559382 | chr1:156964802 | CTT/C | 2.66E-6 | 488 | 16.63 | 15.23 | 12.67 | KM Plot |